STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1804Myo-inositol 1-phosphate synthase A1; Family membership. (437 aa)    
Predicted Functional Partners:
suhB
Inositol-phosphate phosphatase; High confidence in function and specificity; Belongs to the inositol monophosphatase superfamily.
 
 
 0.933
sce9228
Inositol monophosphatase family protein; Family membership.
  
 
 0.921
pgm3
Pgm3 protein; High confidence in function and specificity.
     
 0.919
hxk
Hxk protein; High confidence in function and specificity.
     
 0.918
algC
AlgC protein; High confidence in function and specificity.
    
 0.903
glk
Glk protein; High confidence in function and specificity; Belongs to the bacterial glucokinase family.
     
  0.900
sce3855
CDP-alcohol phosphatidyltransferase family protein; Family membership; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
   
 0.607
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
      
 0.577
sce8184
Conserved hypothetical protein UPF0001; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
      0.571
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
      0.554
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.