STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1815Hypothetical protein predicted by Glimmer/Critica. (494 aa)    
Predicted Functional Partners:
sce2861
Dumpy.
  
     0.740
sce4929
Hypothetical protein; No COG number.
  
     0.724
sce6730
Putative exported protease precursor.
  
     0.693
sce6712
Putative exported protein with glycine-rich central and C-terminal region.
 
     0.662
sce8872
PE-PGRS family protein.
  
     0.640
sce6092
PE-PGRS family protein; Family membership.
  
     0.615
sce8489
Hypothetical protein.
  
     0.603
sce7289
Hypothetical protein; FOG: WD40 repeat.
  
     0.594
sce9085
Hypothetical protein.
  
     0.582
sce8129
Putative secreted protein.
  
     0.579
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.