STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnl1Gnl1 protein; Family membership. (350 aa)    
Predicted Functional Partners:
sce3371
Hypothetical protein predicted by Glimmer/Critica.
  
  
  0.956
gnl2
Gnl2 protein; High confidence in function and specificity.
  
  
 
0.922
CAN91423.1
Gluconokinase; Unnamed protein product.
    
 0.905
gdhB
Quinoprotein glucose dehydrogenase; High confidence in function and specificity.
    
 0.903
sce4944
Putative monooxygenase; Specificity unclear.
  
 
  0.901
gcd
Glucose 1-dehydrogenase; Family membership.
  
 
  0.900
fabG11
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Family membership.
     
 0.900
sce7442
Dehydrogenase of unknown specificity; Specificity unclear.
     
 0.900
ilvD1
Dihydroxy-acid dehydratase; High confidence in function and specificity; Belongs to the IlvD/Edd family.
 
   
 0.635
sce1241
Hypothetical protein predicted by Glimmer/Critica; Specificity unclear.
 
     0.611
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.