Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nirJHeme biosynthesis protein. (464 aa)    
Predicted Functional Partners:
sce1830
Hypothetical conserved protein; Predicted phosphohydrolases.
       0.718
sce6682
Hypothetical protein; Predicted Fe-S oxidoreductases.
  
     0.653
nodD
Nodulation protein D 1; Family membership.
  
    0.577
modR
Putative regulator of molybdate uptake.
 
     0.566
sce1828
Hypothetical protein predicted by Glimmer/Critica.
       0.536
napG
Putative ferredoxin; Family membership.
  
  
 0.512
sce2139
Hypothetical protein.
 
  
 0.512
sce8584
Nitric oxide reductase; High confidence in function and specificity.
 
  
 0.509
sce6823
NRPS/PKS hybrid.
 
  
 0.470
norB
Nitric oxide reductase; High confidence in function and specificity.
 
  
 0.463
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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