Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srfJGlucosylceramidase (O-glycosyl hydrolase); Specificity unclear; Belongs to the glycosyl hydrolase 30 family. (551 aa)    
Predicted Functional Partners:
sce3478
Fatty acid desaturase; Specificity unclear.
  
  
  0.913
sce4410
Hypothetical protein.
     
 0.904
ugcG
Ceramide glucosyltransferase; High confidence in function and specificity.
     
  0.900
galA
Arabinogalactan endo-1,4-beta-galactosidase; High confidence in function and specificity.
  
   
 0.691
sce3304
Put. Xylosidase/arabinosidase.
 
  
 0.591
xynB4
Xylan 1,4-beta-xylosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.490
sce6897
Fn3_like domain-containing protein; Unnamed protein product; Family membership.
 
   
 0.467
sce1485
Putative Beta-xylosidase; Family membership; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.465
yagH
Beta-xylosidase (14-beta-D-xylan xylohydrolase) (Xylan 14-beta-xylosidase); High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.451
CAN90240.1
Pseudogene.
  
  
 0.448
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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