Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1844Hypothetical protein predicted by Glimmer/Critica. (1006 aa)    
Predicted Functional Partners:
sce5943
TPR domain protein; Family membership.
    
 
 0.798
sce3873
WD-repeat protein.
  
     0.773
sce8651
Outer membrane protein, putative.
  
     0.772
sce7132
Putative membrane protein.
  
     0.771
sce6479
Putative carbohydrate-binding exported protein.
  
     0.765
capB
Capsule biosynthesis protein CapB, (pXO2-58).
  
     0.764
sce6832
Beta-lactamase-like protein.
  
     0.763
sce3299
Latent transforming growth factor beta binding protein.
  
     0.760
sce0833
Hypothetical protein predicted by Glimmer/Critica.
  
     0.755
sce7575
Putative membrane protein.
  
     0.755
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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