STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1845Sigma-54 dependent transcriptional regulator; Family membership. (585 aa)    
Predicted Functional Partners:
sce1846
Protein kinase; Family membership.
       0.773
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.738
CAN92074.1
Pseudogene.
  
     0.627
sce1917
Hypothetical protein.
  
     0.584
sce2927
Sigma-54 factor interaction domain-containing protein; Unnamed protein product; Family membership.
  
     0.541
sce0550
Hypothetical protein/Zn-dependent dipeptidase (fragment); Function unclear.
  
     0.486
cotH
Spore coat protein H; Family membership.
  
     0.481
sce1844
Hypothetical protein predicted by Glimmer/Critica.
       0.455
sce6765
Hypothetical protein predicted by Glimmer/Critica.
  
     0.416
tonB1
Putative TonB protein; Specificity unclear.
  
     0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.