Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1846Protein kinase; Family membership. (1288 aa)    
Predicted Functional Partners:
sce1845
Sigma-54 dependent transcriptional regulator; Family membership.
       0.773
sce9166
Hypothetical protein.
  
     0.701
sce2920
Tetratricopeptide repeat protein.
  
     0.695
sce5244
PE_PGRS family protein; Family membership.
  
     0.689
sce2903
Cytochrome c family protein.
  
     0.687
sce7747
Putative protein phosphatase.
  
     0.679
sce5113
Uncharacterized protein conserved in bacteria.
  
     0.657
sce0119
Putative cell surface protein.
  
     0.644
sce6592
Hypothetical protein predicted by Glimmer/Critica.
  
     0.644
sce4778
Protein kinase; Family membership.
  
     0.641
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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