Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1857Hypothetical protein predicted by Glimmer/Critica. (225 aa)    
Predicted Functional Partners:
sce4584
Hypothetical protein predicted by Glimmer/Critica.
  
     0.765
sce7839
Hypothetical protein predicted by Glimmer/Critica.
  
     0.764
sce1139
Hypothetical protein.
  
     0.758
mukB
Cell division protein; Function unclear.
  
     0.746
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.739
sce7840
Metal ion efflux outer membrane protein family protein, putative.
  
     0.732
sce4583
Hypothetical protein.
  
     0.678
sce6837
Hypothetical protein.
  
     0.657
sce1858
Hypothetical protein.
       0.651
sce5251
Hypothetical protein.
  
     0.648
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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