Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1862Putative periplasmic substrate-binding protein. (314 aa)    
Predicted Functional Partners:
sce1863
Putative ABC-type permease protein; Family membership.
 
 
 0.952
ssuE
FMN reductase; High confidence in function and specificity.
 
 
 0.913
ssuC
Aliphatic sulfonate ABC transporter, membrane protein; High confidence in function and specificity.
 
 
 0.879
sce0166
ABC transporter permease protein; Specificity unclear.
 
 
 0.878
sce2758
Putative ABC transporter permease protein; Family membership.
 
 
 0.876
sce1323
ABC transporter permease protein.
 
 
 0.875
sce1322
ABC transporter permease protein; Specificity unclear.
 
 
 0.870
sce3378
ABC transporter permease protein.
 
 
 0.863
sce4769
ABC-type transporter, permease protein; Specificity unclear.
 
 
 0.848
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.845
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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