STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1869Predicted membrane protein. (160 aa)    
Predicted Functional Partners:
sce3434
Hypothetical protein.
 
  
 0.691
msrQ
Putative membrane protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, usin [...]
  
  
 0.591
sce3435
Hypothetical protein; Function unclear; Belongs to the UPF0276 family.
 
  
 0.566
sce7706
Uncharacterized protein conserved in bacteria.
 
  
 0.566
sce1885
Uncharacterized protein conserved in bacteria.
 
  
 0.564
sce6053
Uncharacterized protein conserved in bacteria.
  
  
 0.561
sce6052
Uncharacterized protein conserved in bacteria.
 
  
 0.560
sce3381
Hypothetical protein.
  
    0.525
sce0141
Uncharacterized protein conserved in bacteria.
  
  
 0.495
sce2382
Putative secreted protein.
  
     0.487
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.