STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1872Unnamed protein product; Family membership. (274 aa)    
Predicted Functional Partners:
hgo
Homogentisate 1,2-dioxygenase; High confidence in function and specificity.
 
 
 0.747
sce5980
Homogentisate 1,2-dioxygenase; Family membership.
 
 
 0.747
sce1787
Acyl-CoA carboxylase subunit; High confidence in function and specificity.
  
  
 0.559
sce2589
Probable Acetyl-CoA carboxylase; Family membership.
  
  
 0.559
sce3292
Probable Acyl-CoA carboxylase.
  
  
 0.559
sce1698
Putative pterin-4-alpha-carbinolamine dehydratase; High confidence in function and specificity.
  
  
 0.548
sce6690
Hypothetical protein.
  
     0.513
sce4172
DNA-binding protein.
  
     0.482
sce7149
SGNH_hydro domain-containing protein; Unnamed protein product; Function unclear.
  
     0.470
phhA
Phenylalanine 4-monooxygenase; Family membership.
  
  
 0.448
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.