STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1885Uncharacterized protein conserved in bacteria. (495 aa)    
Predicted Functional Partners:
sce3434
Hypothetical protein.
 
  
 0.928
sce6053
Uncharacterized protein conserved in bacteria.
 
  
 0.788
sce1887
Hypothetical protein predicted by Glimmer/Critica.
       0.780
sce1886
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce1888
Hypothetical protein predicted by Glimmer/Critica.
       0.741
sce1869
Predicted membrane protein.
 
  
 0.564
sce7866
Hypothetical protein predicted by Glimmer/Critica; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.547
sce1889
Hypothetical protein.
       0.528
sce1884
Hypothetical protein; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit.
       0.493
sce2395
Putative cation-transporting ATPase; Family membership.
   
    0.465
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.