Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1949Protein kinase; Family membership. (1080 aa)    
Predicted Functional Partners:
sce8208
CDP-diacylglycerol--serine O-phosphatidyltransferase.
  
     0.708
sce2557
Putative secreted protein.
  
    0.694
sce5401
Hypothetical protein.
  
     0.687
sce1948
Unnamed protein product; Family membership.
   
   0.672
sce9133
Putative secreted protein; Family membership.
  
     0.668
sce9258
Hypothetical protein.
  
     0.667
sce3465
Putative secreted protein.
  
     0.664
sce4975
Putative secreted protein.
  
     0.652
sce2039
Glutamyl endopeptidase; Family membership; Belongs to the peptidase S1B family.
  
     0.644
sce5866
Putative membrane protein.
  
     0.644
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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