Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1965Hypothetical protein predicted by Glimmer/Critica. (274 aa)    
Predicted Functional Partners:
sce6775
COG: Uncharacterized protein conserved in bacteria.
 
     0.787
sce8938
Uncharacterized protein conserved in bacteria.
 
     0.787
sce6776
Uncharacterized protein conserved in bacteria.
 
     0.786
cgeB
Uncharacterized protein conserved in bacteria.
 
     0.784
sce6777
Uncharacterized protein conserved in bacteria.
 
     0.784
sce6793
Putative SAM-dependent methyltransferase; Family membership.
 
     0.779
sce6795
Glycosyltransferase-like conserved protein; Family membership.
 
     0.779
sce8937
Putative glycosyltransferase; Family membership.
 
     0.776
sce6774
Glycosyltransferase; Specificity unclear.
 
     0.754
sce6792
Glyco_hydro_cc domain-containing protein; Unnamed protein product; High confidence in function and specificity.
 
     0.738
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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