STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1984Transposase, IS4 family; High confidence in function and specificity. (461 aa)    
Predicted Functional Partners:
sce4584
Hypothetical protein predicted by Glimmer/Critica.
  
     0.675
sce7168
Hypothetical protein.
  
     0.595
sce1857
Hypothetical protein predicted by Glimmer/Critica.
  
     0.553
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.551
sce2003
Uncharacterized protein conserved in cyanobacteria.
  
     0.504
sce1139
Hypothetical protein.
  
     0.499
sce1983
Hypothetical protein predicted by Glimmer/Critica.
       0.468
sce8531
Hypothetical protein.
  
     0.459
sce0260
Uncharacterized protein conserved in cyanobacteria.
  
     0.456
sce1985
No hits.
       0.450
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.