STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1993Hypothetical protein predicted by Glimmer/Critica. (631 aa)    
Predicted Functional Partners:
sce3806
Hypothetical protein.
  
     0.767
sce6217
Hypothetical protein.
  
     0.761
sce6761
Hypothetical protein.
  
     0.754
sce0825
Hypothetical protein.
  
     0.748
sce2683
Hypothetical protein.
  
     0.748
sce0826
Hypothetical protein.
  
     0.736
sce9290
Hypothetical protein.
  
     0.735
sce6213
DUF323 hypothetical protein.
  
     0.729
sce1095
Putative secreted protein.
  
     0.674
sce3784
Hypothetical protein.
  
     0.650
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.