STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1995acyl-CoA synthetase; Family membership. (567 aa)    
Predicted Functional Partners:
sce1997
Putative Acyl-CoA dehydrogenase.
  
 
  0.888
sce2387
Non-ribosomal peptide synthetase; Family membership.
 
 
0.878
sce8261
Polyketide synthase type I; Family membership.
 
 0.877
sce1998
Enoyl-CoA hydratase.
 
   0.864
sce8256
Non-ribosomal peptide synthetase; Family membership.
 
 
0.855
sce8661
Probable oxidoreductase; Family membership.
 
   
 0.820
sce8262
Non-ribosomal peptide synthetase; Family membership.
 
 
0.814
sce1994
Hypothetical protein.
 
     0.809
sce1996
NADH:flavin oxidoreductase / NADH oxidase family protein; Family membership.
     
 0.776
boxC
Enoyl-CoA hydratase/isomerase; Family membership.
 
   0.773
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.