Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2034Hypothetical protein; Belongs to the LarC family. (472 aa)    
Predicted Functional Partners:
sce5850
Conserved hypothetical protein/ATP-utilizing enzymes of the PP-loop superfamily; Family membership.
  
 0.985
sce2033
NCAIR mutase (PurE)-related proteins.
 
  
 0.976
sce8293
Lar_N domain-containing protein; Unnamed protein product.
 
  
 0.735
cbiM
Cobalamin biosynthesis integral membrane protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
 
    0.690
sce6461
Probable oxidoreductase.
 
    0.539
sce1085
Hypothetical protein.
 
     0.532
nuoF
NADH dehydrogenase (ubiquinone); High confidence in function and specificity.
   
    0.477
sce7729
Putative oxidoreductase; Family membership.
 
     0.412
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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