Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2057Putative sphingosine kinase enzyme; High confidence in function and specificity. (341 aa)    
Predicted Functional Partners:
sce2058
Hypothetical protein; No COG number.
       0.773
sce3866
Hypothetical protein predicted by Glimmer/Critica.
  
     0.736
sce9085
Hypothetical protein.
  
     0.707
sce1654
Hypothetical membrane-associated protein.
  
     0.702
sce0090
Transposase; High confidence in function and specificity.
  
     0.701
sce4926
Transposase; High confidence in function and specificity.
  
     0.701
sce5909
Hypothetical protein.
  
     0.699
sce7364
Transposase; High confidence in function and specificity.
  
     0.693
sce5360
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.688
sce8436
Hypothetical protein.
  
  
  0.687
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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