Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2065Hypothetical protein. (759 aa)    
Predicted Functional Partners:
treS
Trehalose synthase; High confidence in function and specificity.
   
    0.775
sce2062
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce2063
Hypothetical protein.
       0.773
sce2064
Asparagine synthetase; Family membership.
       0.773
glgA
Put. Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.724
glgA2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.724
glgP
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
    0.654
sce3523
DNA_LIGASE_A3 domain-containing protein; Unnamed protein product; High confidence in function and specificity.
  
    0.619
sce1303
Glycogen operon protein; Family membership; Belongs to the glycosyl hydrolase 13 family.
  
    0.598
sce1793
Hypothetical protein; Family membership.
  
     0.583
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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