STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2069Hypothetical protein; Predicted Zn-dependent peptidases. (530 aa)    
Predicted Functional Partners:
sce3833
Hypothetical protein predicted by Glimmer/Critica.
  
0.951
sce7592
Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.936
sce2646
Oxidoreductase; Specificity unclear.
   
 0.929
sce2070
Putative zinc protease; Family membership.
 
  
0.891
sce8461
Hypothetical protein predicted by Glimmer/Critica.
  
0.888
nuoF
NADH dehydrogenase (ubiquinone); High confidence in function and specificity.
   
 
 0.855
nuoG
NADH dehydrogenase (ubiquinone); Family membership.
   
 
 0.842
petB
Cytochrome b6.
    
 0.830
nuoE
NADH dehydrogenase (ubiquinone); High confidence in function and specificity.
   
 
 0.824
sce2387
Non-ribosomal peptide synthetase; Family membership.
   
 
 0.737
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.