Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2099Hypothetical protein. (999 aa)    
Predicted Functional Partners:
sce2094
Hypothetical protein.
 
 
   0.955
sce2097
GPW_gp25 domain-containing protein; Unnamed protein product; Hypothetical protein.
 
 
   0.955
sce2100
Hypothetical protein predicted by Glimmer/Critica.
 
     0.952
sce2093
Hypothetical protein predicted by Glimmer/Critica.
 
 
   0.949
sce2095
Uncharacterized protein conserved in bacteria.
 
     0.948
sce2101
Possible Pectine lyase family protein.
 
     0.941
sce2092
Hypothetical protein.
 
     0.932
sce2086
Hypothetical protein.
 
 
   0.918
sce2087
Hypothetical protein.
 
     0.913
sce2089
Hypothetical protein.
 
     0.912
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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