STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2118Putative oxidoreductase; Family membership. (1104 aa)    
Predicted Functional Partners:
sce2119
Putative racemase; Specificity unclear.
   
 0.962
sce2120
Pyruvate oxidase; High confidence in function and specificity; Belongs to the TPP enzyme family.
 
 
 
 0.883
sce0625
Electron transfer flavoprotein alpha-subunit; Family membership.
 
 
 0.761
sce0626
Putative electron transfer flavoprotein beta-subunit; Family membership.
  
 
 0.727
sce8531
Hypothetical protein.
  
     0.595
gap
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); High confidence in function and specificity; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.569
fabG4
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.559
idi
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.536
sce7671
(S)-2-hydroxy-acid oxidase; Family membership.
  
 0.536
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
     
 0.535
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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