Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2122Putative multicopper oxidase. (651 aa)    
Predicted Functional Partners:
sce3022
Hypothetical protein.
  
  
  0.707
sce7690
Hypothetical protein.
  
     0.701
sce0703
Hypothetical protein.
  
  
  0.688
sce4535
Hypothetical protein predicted by Glimmer/Critica.
  
   
 0.672
sce6585
Predicted membrane protein.
  
     0.670
sce4991
FHA domain protein.
  
     0.665
sce0339
Hypothetical protein.
  
     0.647
sce8414
Putative membrane protein.
  
     0.643
sce4039
Hypothetical protein.
 
   
 0.641
sce6521
Posible heat shock protein.
  
  
  0.627
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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