STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2126Hypothetical protein. (433 aa)    
Predicted Functional Partners:
sce2125
Hypothetical protein.
 
 
   0.970
sce2127
Hypothetical protein.
 
 
   0.958
sce2124
Hypothetical protein.
 
     0.917
sce2128
Putative secreted protein.
       0.461
sce0495
Hypothetical protein predicted by Glimmer/Critica.
   
   0.430
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
   0.430
sce5242
Hypothetical protein.
   
   0.430
sce5864
Response regulatory domain-containing protein; Unnamed protein product; Hypothetical protein.
   
   0.430
sce5906
Putative exported glycine/glutamine-rich protein.
   
   0.430
sce6720
Hypothetical protein.
   
   0.430
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.