Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rppANaringenin-chalcone synthase; High confidence in function and specificity. (363 aa)    
Predicted Functional Partners:
sce5612
Hydrolase; Family membership.
    
   0.722
ubiG2
3-demethylubiquinone-9 3-O-methyltransferase; Family membership.
 
     0.702
phr
Phr protein; High confidence in function and specificity.
    
   0.686
sce2184
Putative electron transfer oxidoreductase.
 
  
 0.674
sce3190
Polyketide synthase; Family membership.
   
 
 0.658
sce2135
Hypothetical protein.
       0.603
sce2134
Put. oxidoreductase; aldo-keto family.
       0.598
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.526
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.516
sce3192
Polyketide synthase; Family membership.
  
 
 0.515
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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