Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2139Hypothetical protein. (729 aa)    
Predicted Functional Partners:
sce2142
ABC transporter, periplasmic-substrate binding protein, putative; Family membership.
 
    0.951
sce2138
Putative multicopper oxidase.
 
     0.938
sce2141
Putative membrane protein; Function unclear.
 
     0.911
sce2140
Putative secreted protein.
 
     0.894
sce6823
NRPS/PKS hybrid.
  
    0.804
mxcF
Isochorismatase; High confidence in function and specificity.
  
    0.772
sce9256
Putative secreted protein.
  
     0.724
napG
Putative ferredoxin; Family membership.
  
 
 0.666
tonB1
Putative TonB protein; Specificity unclear.
  
    0.649
sce7690
Hypothetical protein.
  
     0.642
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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