STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2142ABC transporter, periplasmic-substrate binding protein, putative; Family membership. (588 aa)    
Predicted Functional Partners:
sce2139
Hypothetical protein.
 
    0.951
sce2138
Putative multicopper oxidase.
 
    0.940
sce2141
Putative membrane protein; Function unclear.
 
   
 0.919
sce2140
Putative secreted protein.
 
   
 0.896
sce9256
Putative secreted protein.
 
     0.740
sce8604
Branched-chain amino acid ABC transporter, ATP-binding protein; Family membership.
  
  
 0.673
sce5581
Putative branched-chain amino acid ABC transporter, permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.657
sce8603
Putative ABC transport protein, permease component; Family membership; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.657
sce8154
Hypothetical protein predicted by Glimmer/Critica.
 
     0.650
amiB
N-acetylmuramoyl-L-alanine amidase precursor; High confidence in function and specificity.
  
   
 0.645
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.