STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2153Transcriptional regulator, TetR family; Family membership. (220 aa)    
Predicted Functional Partners:
gst6
Putative glutathione S-transferase protein; High confidence in function and specificity.
       0.631
sce2154
NAD-dependent epimerase/dehydratase; Family membership.
       0.547
sce2557
Putative secreted protein.
  
     0.469
sce1557
Hypothetical protein.
 
     0.468
sce6858
TPR_REGION domain-containing protein; Unnamed protein product; Family membership.
  
   
 0.458
sce7023
Transcriptional regulator, TetR family; Family membership.
  
     0.454
sce6697
Putative transcriptional regulator.
  
     0.452
sce4771
Alpha/beta hydrolase fold; Family membership.
  
     0.440
sce8208
CDP-diacylglycerol--serine O-phosphatidyltransferase.
  
     0.437
sce3961
Hypothetical protein predicted by Glimmer/Critica.
  
     0.432
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.