Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dhaHaloalkane dehalogenase; Family membership. (300 aa)    
Predicted Functional Partners:
adh2
Class III alcohol dehydrogenase; High confidence in function and specificity; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.905
adh1
Alcohol dehydrogenase; Family membership.
     
  0.900
adh5
Alcohol dehydrogenase; High confidence in function and specificity.
    
  0.900
sce2167
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.779
sce2163
Hypothetical protein.
       0.570
sce2164
Dehydrogenase; Family membership; Belongs to the aldehyde dehydrogenase family.
       0.570
sce2165
Hypothetical protein predicted by Glimmer/Critica.
       0.570
sce2166
Hypothetical protein predicted by Glimmer/Critica.
       0.570
sce2169
Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases.
   
   0.546
sce0738
Cupin-like protein.
  
     0.511
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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