Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2172Hypothetical protein. (329 aa)    
Predicted Functional Partners:
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.783
sce2345
Hypothetical protein predicted by Glimmer/Critica.
 
     0.703
sce4309
Hybrid sensory histidine kinase; Family membership.
  
  
 0.696
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.689
sce0198
Hypothetical protein.
  
     0.666
sce5452
Conserved hypothetical protein with a signal peptide.
  
  
 0.635
sce6526
Hypothetical protein.
  
  
 0.635
sce7079
Hypothetical protein.
  
  
 0.635
sce7132
Putative membrane protein.
  
     0.630
sce9256
Putative secreted protein.
  
     0.629
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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