STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2184Putative electron transfer oxidoreductase. (387 aa)    
Predicted Functional Partners:
ubiG2
3-demethylubiquinone-9 3-O-methyltransferase; Family membership.
 
     0.952
chsA
Naringenin-chalcone synthase; Family membership.
 
  
 0.949
crtB
Phytoene synthase; Family membership.
 
  
 0.729
sce5828
Monooxygenase family protein; Family membership.
  
     0.685
rppA
Naringenin-chalcone synthase; High confidence in function and specificity.
 
  
 0.674
sce0626
Putative electron transfer flavoprotein beta-subunit; Family membership.
  
 
 0.643
sce1219
Putative Methyltransferase; Family membership.
  
    0.551
sce2185
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.509
sce2186
Hypothetical protein predicted by Glimmer/Critica.
       0.509
sce6347
Putative mechanosensitive channel protein; Family membership.
  
     0.486
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.