STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xysAEndo-1,4-beta-xylanase; High confidence in function and specificity. (449 aa)    
Predicted Functional Partners:
sce7853
Exported O-glycosyl hydrolase; Family membership.
 
   0.970
abfB
Alpha-L-arabinofuranosidase precursor; High confidence in function and specificity.
 
   0.965
sce7850
Alpha-L-arabinofuranosidase precursor; Family membership.
 
   0.949
sce3277
Putative Esterase; Esterase with broad substrate specificity, that may be involved in degradation of plant biomass present in the habitat of S.cellulosum. In vitro, displays acetyl esterase activity, aryl esterase activity, paraben esterase activity, carboxyl esterase activity, poly-3-hydroxybutyric acid (PHB) depolymerase activity, and a low feruloyl esterase activity. Does not possess any paraoxonase activity. Is able to bind to multiple substrate molecules simultaneously.
 
 
   0.831
sce4184
Hypothetical protein predicted by Glimmer/Critica.
 
 
   0.811
sce6739
Putative lipase; Family membership.
 
 
   0.809
sce0965
Glycosyl hydrolase family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.801
sce2869
Putative secreted protein; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.797
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
     0.791
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.789
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.