STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2194Hypothetical protein; Type II restriction enzyme methylase subunits. (1115 aa)    
Predicted Functional Partners:
sce3239
Superfamily II DNA and RNA helicase.
 
   
 0.799
sce3238
Hypothetical protein.
 
     0.786
sce3243
Hypothetical protein; Superfamily II DNA/RNA helicases SNF2 family.
 
     0.779
gst7
Putative glutathione transferase; High confidence in function and specificity; Belongs to the GST superfamily.
       0.584
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.523
sce4398
Hypothetical protein.
  
     0.509
sce2649
General stress protein.
  
     0.472
sce3969
General stress protein.
  
     0.472
sce2196
Hypothetical protein predicted by Glimmer/Critica.
       0.431
sce3623
Hypothetical protein; FOG: WD40 repeat.
 
     0.409
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.