Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce2212Putative topoisomerase; Family membership. (488 aa)    
Predicted Functional Partners:
sce9318
No hits; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.865
sce6693
O-Glycosyl hydrolase; Specificity unclear.
 
     0.785
sce0965
Glycosyl hydrolase family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.781
sce2869
Putative secreted protein; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.777
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.777
sce4904
Hypothetical protein.
 
     0.775
sce3277
Putative Esterase; Esterase with broad substrate specificity, that may be involved in degradation of plant biomass present in the habitat of S.cellulosum. In vitro, displays acetyl esterase activity, aryl esterase activity, paraben esterase activity, carboxyl esterase activity, poly-3-hydroxybutyric acid (PHB) depolymerase activity, and a low feruloyl esterase activity. Does not possess any paraoxonase activity. Is able to bind to multiple substrate molecules simultaneously.
  
     0.774
sce4005
Glycosyl hydrolases family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.773
sce6739
Putative lipase; Family membership.
  
     0.773
sce4184
Hypothetical protein predicted by Glimmer/Critica.
  
     0.771
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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