STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2216Unknown protein. (922 aa)    
Predicted Functional Partners:
sce9272
Hypothetical protein predicted by Glimmer/Critica.
  
     0.651
sce3603
PE_PGRS family protein.
  
     0.637
sce6130
Putative secreted protein.
  
     0.635
sce8763
PE-PGRS family protein.
  
     0.632
sce3649
Response regulatory domain-containing protein; Unnamed protein product; Family membership.
  
   
 0.626
sce5360
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
  
 0.592
sce6711
Putative exported protein with glycine-rich central und C-terminal region.
  
     0.571
sce2921
Tetratricopeptide repeat protein.
 
   
 0.569
sce8490
Putative dehydrogenase/GMP reductase.
  
     0.567
surE2
5'-nucleotidase, cytosolic II; High confidence in function and specificity.
 
  
 0.554
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.