Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2223Put. Sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family. (334 aa)    
Predicted Functional Partners:
sce2220
LACI-type transcriptional regulator; Specificity unclear.
 0.998
sce2221
Unnamed protein product; Specificity unclear.
 
 0.994
sce3308
put.Periplasmic protein precursor; Family membership.
 0.987
sce2222
Sugar ABC transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.982
sce3307
Put. ATP-binding component of a transport system; Specificity unclear.
 
 0.977
sce3322
Put. D-ribose-binding periplasmic protein; Specificity unclear.
 
 0.925
xylG
ABC transporter, nucleotide binding/ATPase protein; High confidence in function and specificity.
 
 
 0.889
rbsA1
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.885
sce3101
ABC transporter, nucleotide binding/ATPase protein; Specificity unclear.
 
 
 0.882
rbsA2
Ribose transport ATP-binding protein; High confidence in function and specificity.
 
 
 0.880
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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