STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2235Protein kinase; Family membership. (682 aa)    
Predicted Functional Partners:
sce3217
Serine/threonine-protein kinase; Family membership.
  
    0.764
sce2236
Putative two-component system sensor kinase; Family membership.
   
   0.586
sce9133
Putative secreted protein; Family membership.
  
     0.550
sce8208
CDP-diacylglycerol--serine O-phosphatidyltransferase.
 
    0.520
yhjM
Cellulase; Family membership.
       0.454
sce3321
Hypothetical protein.
  
     0.454
sce2039
Glutamyl endopeptidase; Family membership; Belongs to the peptidase S1B family.
  
     0.452
sce5401
Hypothetical protein.
  
     0.447
sce7164
Hypothetical protein predicted by Glimmer/Critica.
  
     0.447
sce2038
Putative protease.
 
 
   0.431
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.