STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2240Transcriptional regulator, AraC family; Family membership. (304 aa)    
Predicted Functional Partners:
sce5415
Transcriptional regulator, AraC family; Family membership.
  
     0.748
sce5287
Transcriptional regulator, AraC family; Family membership.
  
     0.745
sce0089
Transcriptional regulator, AraC family; Family membership.
  
     0.741
sce1536
Transcriptional regulator, AraC family; Family membership.
  
     0.709
sce3627
Transcriptional regulator, AraC family; Specificity unclear.
  
     0.695
sce8847
Transcriptional regulator, AraC family; Family membership.
  
     0.606
sce8832
Putative AraC-family transcriptional regulator; Family membership.
  
   0.586
clpP1
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.536
sce8850
Transcriptional regulator, AraC family; Family membership.
  
     0.520
sce6372
Putative AraC-family transcriptional regulator.
  
   0.482
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.