Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
syrMTranscriptional regulator syrM. (110 aa)    
Predicted Functional Partners:
sce2176
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.747
sce5183
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.743
sce0177
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.738
sce8852
Nodulation protein D; Belongs to the LysR transcriptional regulatory family.
  
     0.736
sce6183
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.733
sce7797
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.731
sce6383
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.725
sce1117
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.721
sce1843
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.719
leuO
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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