STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2265Hypothetical protein. (363 aa)    
Predicted Functional Partners:
sce2672
Hypothetical protein.
  
     0.710
sce5344
No similarity; Uncharacterized protein conserved in bacteria.
  
     0.663
sce2673
RNA-directed DNA polymerase; High confidence in function and specificity.
  
     0.633
sce3364
Hypothetical protein; Family membership.
  
     0.585
sce7145
Unnamed protein product; Family membership.
  
     0.576
sce0678
Hypothetical protein predicted by Glimmer/Critica.
  
     0.572
sce1915
Hypothetical protein; FOG: WD40 repeat.
  
     0.540
sce8987
Hypothetical protein predicted by Glimmer/Critica.
  
     0.505
sce8252
Hypothetical protein predicted by Glimmer/Critica.
  
     0.496
sce7672
Hypothetical protein.
  
     0.490
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.