STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2299Putative decarboxylase. (483 aa)    
Predicted Functional Partners:
sce8254
Diaminobutyrate--2-oxoglutarate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.921
phhA
Phenylalanine 4-monooxygenase; Family membership.
    
 0.916
sce9156
Amine oxidase (flavin-containing); Family membership.
    
 0.914
aspB1
Aspartate transaminase; Family membership.
  
 
 0.906
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
     
 0.903
hisC1
Histidinol-phosphate aminotransferase; Family membership.
    
 0.902
hisC2
Histidinol-phosphate aminotransferase; Family membership; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.902
hisC3
Histidinol-phosphate transaminase; Family membership; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.902
hisC4
Histidinol-phosphate transaminase; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.902
sce1525
Hypothetical protein; Predicted metal-dependent hydrolase.
     
  0.900
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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