Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2306Hypothetical protein predicted by Glimmer/Critica. (318 aa)    
Predicted Functional Partners:
sce0533
Putative secreted trypsin-like serine protease.
  
 
  0.839
sce0201
Putative trypsin precursor.
  
 
  0.838
sce2207
Slit homolog 3 protein precursor (Slit-3).
  
     0.772
sce1332
Lysyl oxidase-like; Family membership.
  
     0.769
sce2637
Peptidyl-glycine alpha-amidating monooxygenase precursor; High confidence in function and specificity.
  
     0.762
sce8646
Hypothetical protein predicted by Glimmer/Critica.
  
     0.762
sce5460
Collagen alpha 2(I) chain precursor; Family membership.
  
     0.758
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.756
sce7070
Peptidylglycine alpha-amidating monooxygenase; Family membership.
  
     0.750
sce6803
Probable serine protease; Family membership.
  
 
  0.748
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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