Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2315Hypothetical protein predicted by Glimmer/Critica. (97 aa)    
Predicted Functional Partners:
sce3893
Hypothetical protein.
  
     0.750
sce0229
Hypothetical protein.
  
     0.746
sce3894
Hypothetical protein.
  
     0.741
sce0230
WD-repeat protein.
  
     0.733
sce3989
Protein kinase; Family membership.
  
 
   0.719
sce6827
Protein kinase; Family membership.
  
 
   0.718
sce2676
Protein kinase; Family membership.
  
 
   0.712
sce4031
Protein kinase.
  
     0.708
sce5446
Protein kinase; Family membership.
  
     0.708
sce5445
Protein kinase; Family membership.
  
     0.707
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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