Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2323Hypothetical protein; Glucose/sorbosone dehydrogenases. (812 aa)    
Predicted Functional Partners:
sce0552
Putative secreted protein.
  
     0.577
sce3561
PE-PGRS family protein.
  
     0.499
sce6350
Vitelline membrane outer layer protein I-like Hypothetical protein.
  
     0.471
sce4244
Hypothetical protein; No COG number.
  
     0.444
sce0870
Hypothetical protein; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
     0.428
sce0871
Hypothetical protein.
  
   
 0.427
sce0895
Putative exported sugar-binding protein with thrombospondin-like C-terminal domain.
  
     0.426
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.413
sce0867
Hypothetical protein predicted by Glimmer/Critica.
 
     0.405
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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