Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trxA2Thioredoxin; Family membership; Belongs to the thioredoxin family. (123 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; High confidence in function and specificity.
 
 
 0.826
trxC1
Thioredoxin; High confidence in function and specificity.
  
   
 0.776
sce9086
Thioredoxin family protein.
 
 
 
 0.774
sce8790
Pyridine nucleotide-disulphide oxidoreductase,class II; Family membership.
  
 
 0.763
cysH
Phosphoadenylyl-sulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.
    
 
 0.715
sce4344
Hypothetical protein, similar to thioredoxin reductase.
  
 
 0.594
arsC2
Arsenate reductase (glutaredoxin); Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.571
sce2338
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.569
groL1
GroEL like chaperone, HSP60 family; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.565
groL2
Heat shock protein groEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.565
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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