Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2338ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily. (207 aa)    
Predicted Functional Partners:
sce8599
Hypothetical protein.
  
 
   0.703
sce8989
Hypothetical protein predicted by Glimmer/Critica.
  
     0.700
sce9100
Hypothetical protein; Family membership.
  
     0.684
sce5241
Hypothetical protein.
  
     0.676
sce1654
Hypothetical membrane-associated protein.
  
     0.673
sce5353
Putative secreted protein.
  
     0.673
sce4949
Hypothetical protein.
  
     0.636
sce0489
Hypothetical protein predicted by Glimmer/Critica.
  
     0.613
sce7760
Probable cytochrome oxidase (cbb3-type).
  
    0.609
sce0678
Hypothetical protein predicted by Glimmer/Critica.
  
     0.607
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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