STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2341Hypothetical protein predicted by Glimmer/Critica. (270 aa)    
Predicted Functional Partners:
sce2340
Transcriptional regulator, ArsR family; Family membership.
 
    0.950
sce1461
3-demethylubiquinone-9 3-methyltransferase; High confidence in function and specificity.
  
     0.515
sce5141
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.510
sce2339
Hypothetical protein; Predicted N-formylglutamate amidohydrolase.
       0.504
sce5148
Hypothetical protein predicted by Glimmer/Critica.
 
     0.484
sce3299
Latent transforming growth factor beta binding protein.
  
     0.466
sce7132
Putative membrane protein.
  
     0.465
sce1844
Hypothetical protein predicted by Glimmer/Critica.
  
     0.455
sce3927
Hypothetical protein.
  
     0.449
sce8651
Outer membrane protein, putative.
  
     0.439
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.