Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2349Amidase; Family membership. (348 aa)    
Predicted Functional Partners:
sce2350
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains.
 
     0.906
sce2348
Hypothetical protein predicted by Glimmer/Critica.
       0.783
sce5370
Fibronectin type III domain protein.
  
     0.752
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
    0.738
sce1011
Hypothetical protein.
 
    0.704
sce2332
Hypothetical protein.
  
     0.694
sce7033
Hypothetical protein.
  
     0.658
sce3419
Outer membrane protein.
  
     0.649
sce3540
Uncharacterized protein conserved in cyanobacteria.
  
     0.649
sce8729
Protein kinase; Family membership.
 
     0.620
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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